БИОХИМИЯ, 2018, том 83, вып. 10, с. 1427–1449

УДК 577.151.644

АДФ-ингибирование H+-F0F1-АТФ синтазы

Обзор

© 2018 А.С. Лапашина 1,2, Б.А. Фенюк 1,2

Московский государственный университет им. М.В. Ломоносова, факультет биоинженерии и биоинформатики, 119991 Москва, Россия

Московский государственный университет им. М.В. Ломоносова, НИИ физико-химической биологии им. А.Н. Белозерского, 119991 Москва, Россия; электронная почта: feniouk@fbb.msu.ru

Поступила в редакцию 06.12.2017
После доработки 08.06.2018

DOI: 10.1134/S0320972518100019

КЛЮЧЕВЫЕ СЛОВА: АТФ синтаза, F-АТФаза, АДФ-ингибирование, регуляция, F0F1.

Аннотация

H+-F0F1-АТФ синтаза (F-АТФаза, АТФаза F-типа, F0F1-комплекс) катализирует синтез АТФ из АДФ и неорганического фосфата в эубактериях, митохондриях, хлоропластах и некоторых архебактериях. Синтез АТФ сопряжен с транспортом протонов через мембранную часть фермента под действием протон-движущей силы, создаваемой ферментами дыхательной и фотосинтетической цепи переноса электронов. При снижении или исчезновении протон-движущей силы (де-энергизация) АТФ синтаза способна катализировать обратную реакцию, работая как АТФ-зависимый протонный насос. АТФазная активность фермента регулируется несколькими различными механизмами, из которых наиболее консервативным является неконкурентное ингибирование комплексом MgАДФ (АДФ-ингибирование). Если в каталитическом сайте оказывается АДФ в отсутствии фосфата, это может привести к конформационным изменениям, блокирующим выход АДФ и полностью инактивирующим фермент. Высвобождение прочно связанного АДФ и ре-активация АТФ синтазы может происходить под действием протон-движущей силы, причем пороговое значение для ре-активации может быть выше такового для синтеза АТФ. Кроме того, энергизация мембраны увеличивает аффинность каталитического сайта к фосфату, тем самым, снижая вероятность нахождения в сайте АДФ без фосфата и препятствуя переходу фермента в АДФ-инактивированное состояние. Помимо фосфата, некоторые соединения, в том числе, спирты, сульфит и бикарбонат, лаурилдиметиламиноксид (LDAO) и ряд других детергентов также способны ослаблять АДФ-ингибирование и увеличивать АТФазную активность фермента. В обзоре представлена информация по АДФ-ингибированию АТФ синтаз из разных организмов, обсуждается роль этого явления in vivo и его взаимосвязь с другими регуляторными механизмами — ингибированием АТФазной активности субъединицей эпсилон и связыванием нуклеотидов в некаталитических сайтах фермента. Cледует отметить, что в ферменте из Escherichia coli АДФ-ингибирование выражено слабо и не снижается фосфатом.

Текст статьи

Пожалуйста, введите код, чтобы получить PDF файл с полным текстом статьи:

captcha

Сноски

* Адресат для корреспонденции.

Вклад авторов

Авторы внесли одинаковый вклад в представленную работу.

Финансирование

Работа выполнена при финансовой поддержке РНФ (проект 14-14-00128 «Молекулярные механизмы преобразования энергии при бактериальном окислительном фосфорилировании»).

Благодарности

Авторы благодарят анонимных рецензентов за ценные замечания при написании обзора.

Конфликт интересов

Авторы заявляют, что у них нет конфликта интересов.

Список литературы

1. Gruber, G., Manimekalai, M.S.S., Mayer, F., and Muller, V. (2014) ATP synthases from archaea: the beauty of a molecular motor, Biochim. Biophys. Acta, 1837, 940–952.

2. Mulkidjanian, A.Y., Makarova, K.S., Galperin, M.Y., and Koonin, E.V. (2007) Inventing the dynamo machine: the evolution of the F-type and V-type ATPases, Nat. Rev. Microbiol., 5, 892–899.

3. Sumi, M., Yohda, M., Koga, Y., and Yoshida M. (1997) F0F1-ATPase genes from an archaebacterium, Methanosarcina barkeri, Biochem. Biophys. Res. Commun., 241, 427–433.

4. Foster, D.L., and Fillingame, R.H. (1982) Stoichiometry of subunits in the H+-ATPase complex of Escherichia coli, J. Biol. Chem., 257, 2009–2015.

5. Sobti, M., Smits, C., Wong, A.S., Ishmukhametov, R., Stock, D., Sandin, S., and Stewart, A.G. (2016) Cryo-EM structures of the autoinhibited E. coli ATP synthase in three rotational states, Elife, 5, e21598.

6. Cozens, A.L., and Walker, J.E. (1987) The organization and sequence of the genes for ATP synthase subunits in the cyanobacterium Synechococcus 6301, J. Mol. Biol., 194, 359–383.

7. Borghese, R., Turina, P., Lambertini, L., and Melandri, B.A. (1998) The atpIBEXF operon coding for the F0 sector of the ATP synthase from the purple nonsulfur photosynthetic bacterium Rhodobacter capsulatus, Arch. Microbiol., 170, 385–388.

8. Hotra, A., Suter, M., Biukoviс, G., Ragunathan, P., Kundu, S., Dick, T., and Gruber, G. (2016) Deletion of a unique loop in the mycobacterial F-ATP synthase γ subunit sheds light on its inhibitory role in ATP hydrolysis-driven H(+) pumping, FEBS J., 283, 1947–1961.

9. Liu, S., Charlesworth, T.J., Bason, J.V., Montgomery, M.G., Harbour, M.E., Fearnley, I.M., and Walker, J.E. (2015) The purification and characterization of ATP synthase complexes from the mitochondria of four fungal species, Biochem. J., 468, 167–175.

10. Stewart, A.G., Laming, E.M., Sobti, M., and Stock, D. (2014) Rotary ATPases-dynamic molecular machines, Curr. Opin. Struct. Biol., 25, 40–48.

11. Watanabe, R. (2013) Rotary catalysis of FoF1-ATP synthase, Biophysics, 9, 51–56.

12. Junge, W., and Nelson, N. (2015) ATP synthase, Annu. Rev. Biochem., 84, 631–657.

13. Slooten, L., and Vandenbranden, S. (1989) ATP-synthesis by proteoliposomes incorporating Rhodospirillum rubrum F0F1 as measured with firefly luciferase: dependence on Δpsi and ΔpH, Biochim. Biophys. Acta, 976, 150–160.

14. Etzold, C., Deckers-Hebestreit, G., and Altendorf, K. (1997) Turnover number of Escherichia coli F0F1 ATP synthase for ATP synthesis in membrane vesicles, Eur. J. Biochem., 243, 336–343.

15. Junesch, U., and Grаber, P. (1987) Influence of the redox state and the activation of the chloroplast ATP synthase on proton-transport-coupled ATP synthesis/hydrolysis, Biochim. Biophys. Acta, 893, 275–288.

16. Matsuno-Yagi, A., and Hatefi, Y. (1988) Estimation of the turnover number of bovine heart F0F1 complexes for ATP synthesis, Biochemistry, 27, 335–340.

17. Mueller, D.M. (1988) Arginine 328 of the beta-subunit of the mitochondrial ATPase in yeast is essential for protein stability, J. Biol. Chem., 263, 5634–5639.

18. Dunn, S.D., Tozer, R.G., and Zadorozny, V.D. (1990) Activation of Escherichia coli F1-ATPase by lauryldimethylamine oxide and ethylene glycol: relationship of ATPase activity to the interaction of the epsilon and beta subunits, Biochemistry, 29, 4335–4340.

19. Sekiya, M., Nakamoto, R.K., Al-Shawi, M.K., Nakanishi-Matsui, M., and Futai, M. (2009) Temperature dependence of single molecule rotation of the Escherichia coli ATP synthase F1 sector reveals the importance of γ-β subunit interactions in the catalytic dwell, J. Biol. Chem., 284, 22401–22410.

20. Ishmukhametov, R.R., Galkin, M.A., and Vik, S.B. (2005) Ultrafast purification and reconstitution of His-tagged cysteine-less Escherichia coli F1F0 ATP synthase, Biochim. Biophys. Acta, 1706, 110–116.

21. Suzuki, T., Tanaka, K., Wakabayashi, C., Saita, E.-I., and Yoshida, M. (2014) Chemomechanical coupling of human mitochondrial F1-ATPase motor, Nat. Chem. Biol., 10, 930–936.

22. Penin, F., Deleage, G., Godinot, C., and Gautheron, D.C. (1986) Efficient reconstitution of mitochondrial energy-transfer reactions from depleted membranes and F1-ATPase as a function of the amount of bound oligomycin sensitivity- conferring protein (OSCP), Biochim. Biophys. Acta, 852, 55–67.

23. Munoz, E., Salton, M.R.J., Ng, M.H., and Schor, M.T. (1969) Membrane adenosine triphosphatase of Micrococcus lysodeikticus: purification, properties of the «soluble» enzyme and properties of the membrane-bound enzyme, Eur. J. Biochem., 7, 490–501.

24. Gonzales-Siles, L., Karlsson, R., Kenny, D., Karlsson, A., and Sjoling, А. (2017) Proteomic analysis of enterotoxigenic Escherichia coli (ETEC) in neutral and alkaline conditions, BMC Microbiol., 17, 11.

25. Ruhle, T., and Leister, D. (2015) Assembly of F1F0-ATP synthases, Biochim. Biophys. Acta, 1847, 849–860.

26. Grover, G.J., Atwal, K.S., Sleph, P.G., Wang, F.-L., Monshizadegan, H., Monticello, T., and Green, D.W. (2004) Excessive ATP hydrolysis in ischemic myocardium by mitochondrial F1F0-ATPase: effect of selective pharma- cological inhibition of mitochondrial ATPase hydrolase activity, Am. J. Physiol. Heart Circ. Physiol., 287, H1747–1755.

27. Rouslin, W., Erickson, J.L., and Solaro, R.J. (1986) Effects of oligomycin and acidosis on rates of ATP depletion in ischemic heart muscle, Am. J. Physiol., 250, H503–508.

28. Jennings, R.B., Reimer, K.A., and Steenbergen, C. (1991) Effect of inhibition of the mitochondrial ATPase on net myocardial ATP in total ischemia, J. Mol. Cell. Cardiol., 23, 1383–1395.

29. Hensel, M., Deckers-Hebestreit, G., and Altendorf, K. (1991) Purification and characterization of the F1 portion of the ATP synthase (F1F0) of Streptomyces lividans, Eur. J. Biochem., 202, 1313–1319.

30. Lynn, W.S., and Straub, K.D. (1969) ADP kinase and ATPase in chloroplasts, Proc. Natl. Acad. Sci. USA, 63, 540–547.

31. Bakels, R.H.A., van Walraven, H.S., van Wielink, J.E., van der Zwetdegraaff, I., Krenn, B.E., Krab, K., Berden, J.A., and Kraayenhof, R. (1994) The effect of sulfite on the ATP hydrolysis and synthesis activity of membrane-bound H+-ATP synthase from various species, Biochem. Biophys. Res. Commun., 201, 487–492.

32. Pacheco-Moises, F., Minauro-Sanmiguel, F., Bravo, C., and Garcia, J.J. (2002) Sulfite inhibits the F1F0-ATP synthase and activates the F1F0-ATPase of Paracoccus denitrificans, J. Bioenerg. Biomembr., 34, 269–278.

33. Keis, S., Stocker, A., Dimroth, P., and Cook, G.M. (2006) Inhibition of ATP hydrolysis by thermoalkaliphilic F1F0-ATP synthase is controlled by the C-terminus of the epsilon subunit, J. Bacteriol., 188, 3796–3804.

34. Du, Z.Y., and Boyer, P.D. (1990) On the mechanism of sulfite activation of chloroplast thylakoid ATPase and the relation of ADP tightly bound at a catalytic site to the binding change mechanism, Biochemistry, 29, 402–407.

35. Larson, E.M., and Jagendorf, A.T. (1989) Sulfite stimulation of chloroplast coupling factor ATPase, Biochim. Biophys. Acta, 973, 67–77.

36. Avron, M. (1962) Light-dependent adenosine triphosphatase in chloroplasts, J. Biol. Chem., 237, 2011–2017.

37. Yu, F., and McCarty, R.E. (1985) Detergent activation of the ATPase activity of chloroplast coupling factor 1, Arch. Biochem. Biophys., 238, 61–68.

38. Farron, F., and Racker, E. (1970) Mechanism of the conversion of coupling factor 1 from chloroplasts to an active ATPase, Biochemistry, 9, 3829–3836.

39. Mal’yan, A.N. (1981) Chloroplasts ATPase (CF1): allosteric regulation by ADP and Mg2+ ions, Photosynthetica, 15, 474–483.

40. Ren, H.M., and Allison, W.S. (1997) Photoinactivation of the F1-ATPase from spinach chloroplasts by dequalinium is accompanied by derivatization of methionine beta183, J. Biol. Chem., 272, 32294–32300.

41. Ebel, R.E., and Lardy, H.A. (1975) Stimulation of rat liver mitochondrial adenosine triphosphatase by anions, J. Biol. Chem., 250, 191–196.

42. Vаzquez-Laslop, N., and Dreyfus, G. (1986) Mitochondrial H+-ATPase activation by an amine oxide detergent, J. Biol. Chem., 261, 7807–7810.

43. Mueller, D.M. (1989) A mutation altering the kinetic responses of the yeast mitochondrial F1-ATPase, J. Biol. Chem., 264, 16552–16556.

44. Vasilyeva, E.A., Minkov, I.B., Fitin, A.F., and Vinogradov, A.D. (1982) Kinetic mechanism of mitochondrial adenosine triphosphatase. Inhibition by azide and activation by sulphite, Biochem. J., 202, 15–23.

45. Mitchell, P., and Moyle, J. (1971) Activation and inhibition of mitochondrial adenosine triphosphatase by various anions and other agents, J. Bioenerg., 2, 1–11.

46. Feniouk, B.A., and Yoshida, M. (2008) Regulatory mechanisms of proton-translocating F(0)F(1)-ATP synthase, Results Probl. Cell Differ., 45, 279–308.

47. Pullman, M.E., and Monroy, G.C. (1963) A naturally occurring inhibitor of mitochondrial adenosine triphosphatase, J. Biol. Chem., 238, 3762–3769.

48. Cabezon, E., Butler, P.J., Runswick, M.J., and Walker, J.E. (2000) Modulation of the oligomerization state of the bovine F1-ATPase inhibitor protein, IF1, by pH, J. Biol. Chem., 275, 25460–25464.

49. Panchenko, M.V., and Vinogradov, A.D. (1985) Interaction between the mitochondrial ATP synthetase and ATPase inhibitor protein. Active/inactive slow pH-dependent transitions of the inhibitor protein, FEBS Lett., 184, 226–230.

50. Rouslin, W., and Broge, C.W. (1989) Regulation of mitochondrial matrix pH and adenosine 5′-triphosphatase activity during ischemia in slow heart-rate hearts. Role of Pi/H+ symport, J. Biol. Chem., 264, 15224–15229.

51. Garcia-Bermudez, J., and Cuezva, J.M. (2016) The ATPase inhibitory factor 1 (IF1): a master regulator of energy metabolism and of cell survival, Biochim. Biophys. Acta, 1857, 1167–1182.

52. Campanella, M., Parker, N., Tan, C.H., Hall, A.M., and Duchen, M.R. (2009) IF(1): setting the pace of the F(1)F(0)-ATP synthase, Trends Biochem. Sci., 34, 343–350.

53. Feniouk, B.A., Suzuki, T., and Yoshida, M. (2006) The role of subunit epsilon in the catalysis and regulation of F0F1-ATP synthase, Biochim. Biophys. Acta, 1757, 326–338.

54. Suzuki, T., Murakami, T., Iino, R., Suzuki, J., Ono, S., Shirakihara, Y., and Yoshida, M. (2003) F0F1-ATPase/synthase is geared to the synthesis mode by conformational rearrangement of epsilon subunit in response to proton motive force and ADP/ATP balance, J. Biol. Chem., 278, 46840–46846.

55. Feniouk, B.A., Kato-Yamada, Y., Yoshida, M., and Suzuki, T. (2010) Conformational transitions of subunit epsilon in ATP synthase from thermophilic Bacillus PS3, Biophys. J., 98, 434–442.

56. Tsunoda, S.P., Rodgers, A.J., Aggeler, R., Wilce, M.C., Yoshida, M., and Capaldi, R.A. (2001) Large conformational changes of the epsilon subunit in the bacterial F1F0 ATP synthase provide a ratchet action to regulate this rotary motor enzyme, Proc. Natl. Acad. Sci. USA, 98, 6560–6564.

57. Nowak, K.F., and McCarty, R.E. (2004) Regulatory role of the C-terminus of the epsilon subunit from the chloroplast ATP synthase, Biochemistry, 43, 3273–3279.

58. Kato-Yamada, Y., and Yoshida, M. (2003) Isolated epsilon subunit of thermophilic F1-ATPase binds ATP, J. Biol. Chem., 278, 36013–36016.

59. Kato-Yamada, Y. (2005) Isolated epsilon subunit of Bacillus subtilis F1-ATPase binds ATP, FEBS Lett., 579, 6875–6878.

60. Kato, S., Yoshida, M., and Kato-Yamada, Y. (2007) Role of the epsilon subunit of thermophilic F1-ATPase as a sensor for ATP, J. Biol. Chem., 282, 37618–37623.

61. Nakanishi-Matsui, M., Sekiya, M., and Futai, M. (2016) ATP synthase from Escherichia coli: mechanism of rotational catalysis, and inhibition with the ε subunit and phytopolyphenols, Biochim. Biophys. Acta, 1857, 129–140.

62. Hisabori, T., Sunamura, E.-I., Kim, Y., and Konno, H. (2013) The chloroplast ATP synthase features the characteristic redox regulation machinery, Antioxid. Redox Signal., 19, 1846–1854.

63. Ort, D.R., and Oxborough, K. (1992) In situ regulation of chloroplast coupling factor activity, Annu. Rev. Plant Physiol. Plant Mol. Biol., 43, 269–291.

64. Kramer, D.M., and Crofts, A.R. (1989) Activation of the chloroplast ATPase measured by the electrochromic change in leaves of intact plants, Biochim. Biophys. Acta, 976, 28–41.

65. McKinney, D.W., Buchanan, B.B., and Wolosiuk, R.A. (1978) Activation of chloroplast ATPase by reduced thioredoxin, Phytochemistry, 17, 794–795.

66. Dann, M.S., and McCarty, R.E. (1992) Characterization of the activation of membrane-bound and soluble CF1 by thioredoxin, Plant Physiol., 99, 153–160.

67. Kramer, D.M., Wise, R.R., Frederick, J.R., Alm, D.M., Hesketh, J.D., Ort, D.R., and Crofts, A.R. (1990) Regulation of coupling factor in field-grown sunflower: a redox model relating coupling factor activity to the activities of other thioredoxin-dependent chloroplast enzymes, Photosynth. Res., 26, 213–222.

68. Kohzuma, K., Froehlich, J.E., Davis, G.A., Temple, J.A., Minhas, D., Dhingra, A., Cruz, J.A., and Kramer, D.M. (2017) The role of light-dark regulation of the chloroplast ATP synthase, Front. Plant Sci., 8, 1248.

69. Gruber, G., Godovac-Zimmermann, J., and Nawroth, T. (1994) ATP synthesis and hydrolysis of the ATP-synthase from Micrococcus luteus regulated by an inhibitor subunit and membrane energization, Biochim. Biophys. Acta, 1186, 43–51.

70. Morales-Rios, E., de la Rosa-Morales, F., Mendoza-Hernandez, G., Rodriguez-Zavala, J.S., Celis, H., Zarco-Zavala, M., and Garcia-Trejo, J.J. (2010) A novel 11-kDa inhibitory subunit in the F1F0 ATP synthase of Paracoccus denitrificans and related alpha-proteobacteria, FASEB J., 24, 599-608.

71. Zarco-Zavala, M., Morales-Rios, E., Mendoza-Hernandez, G., Ramirez-Silva, L., Perez-Hernandez, G., and Garcia-Trejo, J.J. (2014) The ζ subunit of the F1F0-ATP synthase of α-proteobacteria controls rotation of the nanomotor with a different structure, FASEB J., 28, 2146–2157.

72. Garcia-Trejo, J.J., Zarco-Zavala, M., Mendoza-Hoffmann, F., Hernandez-Luna, E., Ortega, R., and Mendoza-Hernandez, G. (2016) The inhibitory mechanism of the ζ subunit of the F1F0-ATPase nanomotor of Paracoccus denitrificans and related α-proteobacteria, J. Biol. Chem., 291, 538–546.

73. Morales-Rios, E., Montgomery, M.G., Leslie, A.G.W., and Walker, J.E. (2015) Structure of ATP synthase from Paracoccus denitrificans determined by X-ray crystallography at 4.0 Å resolution, Proc. Natl. Acad. Sci. USA, 112, 13231–13236.

74. Ragunathan, P., Sielaff, H., Sundararaman, L., Biukovic, G., Subramanian Manimekalai, M.S., Singh, D., Kundu, S., Wohland, T., Frasch, W., Dick, T., and Gruber, G. (2017) The uniqueness of subunit α of mycobacterial F-ATP synthases: An evolutionary variant for niche adaptation, J. Biol. Chem., 292, 11262–11279.

75. Petrack, B., Craston, A., Sheppy, F., and Farron, F. (1965) Studies on the hydrolysis of adenosine triphosphate by spinach chloroplasts, J. Biol. Chem., 240, 906–914.

76. Carmeli, C., and Lifshitz, Y. (1972) Effects of Pi and ADP on ATPase activity in chloroplasts, Biochim. Biophys. Acta, 267, 86–95.

77. Strotmann, H., and Bickel-Sandkotter, S. (1977) Energy-dependent exchange of adenine nucleotides on chloroplast coupling factor (CF1), Biochim. Biophys. Acta, 460, 126–135.

78. Shoshan, V., and Selman, B.R. (1979) The relationship between light-induced adenine nucleotide exchange and ATPase activity in chloroplast thylakoid membranes, J. Biol. Chem., 254, 8801–8807.

79. Mal’yan, A.N., and Vitseva, O.I. (1990) Kinetic analysis of ADP-and Mg2+-dependent inactivation of CF1-ATPase, Photosynthetica, 24, 613–622.

80. Dunham, K.R., and Selman, B.R. (1981) Interactions of inorganic phosphate with spinach coupling factor 1. Effects on ATPase and ADP binding activities, J. Biol. Chem., 256, 10044–10049.

81. Czarnecki, J.J., Dunham, K.R., and Selman, B.R. (1985) Photoaffinity labeling of the tight ADP binding site of the chloroplast coupling factor one (CF1): the effect on the CF1-ATPase activity, Biochim. Biophys. Acta, 809, 51–56.

82. Zhou, J.M., Xue, Z.X., Du, Z.Y., Melese, T., and Boyer, P.D. (1988) Relationship of tightly bound ADP and ATP to control and catalysis by chloroplast ATP synthase, Biochemistry, 27, 5129–5135.

83. Drobinskaya, I.Y., Kozlov, I.A., Murataliev, M.B., and Vulfson, E.N. (1985) Tightly bound adenosine diphosphate, which inhibits the activity of mitochondrial F1-ATPase, is located at the catalytic site of the enzyme, FEBS Lett., 182, 419–424.

84. Wei, J., Howlett, B., and Jagendorf, A.T. (1988) Azide inhibition of chloroplast ATPase is prevented by a high protonmotive force, Biochim. Biophys. Acta, 934, 72–79.

85. Larson, E.M., Umbach, A., and Jagendorf, A.T. (1989) Sulfite-stimulated release of [3H] ADP bound to chloroplast thylakoid ATPase, Biochim. Biophys. Acta, 973, 78–85.

86. Minkov, I.B., and Strotmann, H. (1989) The effect of azide on regulation of the chloroplast H+-ATPase by ADP and phosphate, Biochim. Biophys. Acta, 973, 7–12.

87. Melandri, B.A., Baccarini-Melandri, A., and Fabbri, E. (1972) Energy transduction in photosynthetic bacteria. IV: light-dependent ATPase in photosynthetic membranes from Rhodopseudomonas capsulata, Biochim. Biophys. Acta, 275, 383–394.

88. Edwards, P.A., and Jackson, J.B. (1976) The control of the adenosine triphosphatase of Rhodospirillum rubrum chromatophores by divalent cations and the membrane high energy state, Eur. J. Biochem., 62, 7–14.

89. Slooten, L., and Nuyten, A. (1981) Activation-deactivation reactions in the ATPase enzyme in Rhodospirillum rubrum chromatophores, Biochim. Biophys. Acta, 638, 305–312.

90. Turina, P., Rumberg, B., Melandri, B.A., and Graber, P. (1992) Activation of the H(+)-ATP synthase in the photosynthetic bacterium Rhodobacter capsulatus, J. Biol. Chem., 267, 11057–11063.

91. Cappellini, P., Turina, P., Fregni, V., Melandri, B.A. (1997) Sulfite stimulates the ATP hydrolysis activity of but not proton translocation by the ATP Synthase of Rhodobacter capsulatus and interferes with its activation by delta muH+, Eur. J. Biochem., 248, 496–506.

92. Bakels, R., Walraven, H.S., and Krab, K. (1993) On the activation mechanism of the H+-ATP synthase and unusual thermodynamic properties in the alkalophilic cyanobacterium Spirulina platensis, Eur. J. Biochem., 213, 957–964.

93. Krab, K., Bakels, R., and Scholts, M. (1993) Activation of the H+-ATP synthase in thylakoid vesicles from the cyanobacterium Synechococcus 6716 by Δμ~ H+. Including a comparison with chloroplasts, and introducing a new method to calibrate light-induced Δμ~ H+, Biochim. Biophys. Acta, 1141, 197–205.

94. Bakels, R., van Wielink, J.E., Krab, K., and van Walraven, H.S. (1996) The effect of sulfite on the ATP hydrolysis and synthesis activities in chloroplasts and cyanobacterial membrane vesicles can be explained by competition with phosphate, Arch. Biochem. Biophys., 332, 170–174.

95. Hockel, M., Hulla, F.W., Risi, S., and Dose, K. (1978) Kinetic studies on bacterial plasma membrane ATPase (F1). Nucleotide-induced long term inactivation of ATP hydrolyzing activity is linked to the formation of multiple ‘tight’ enzyme nucleotide complexes, J. Biol. Chem., 253, 4292–4296.

96. Yoshida, M., and Allison, W.S. (1986) Characterization of the catalytic and noncatalytic ADP binding sites of the F1-ATPase from the thermophilic bacterium, PS3, J. Biol. Chem., 261, 5714–5721.

97. Paik, S.R., Jault, J.-M., and Allison, W.S. (1994) Inhibition and inactivation of the F1 adenosinetriphosphatase from Bacillus PS3 by dequalinum and activation of the enzyme by lauryl dimethylamine oxide, Biochemistry, 33, 126–133.

98. Jault, J.M., Matsui, T., Jault, F.M., Kaibara, C., Muneyuki, E., Yoshida, M., Kagawa, Y., and Allison, W.S. (1995) The alpha3beta3 gamma complex of the F1-ATPase from thermophilic Bacillus PS3 containing the alpha D261N substitution fails to dissociate inhibitory MgADP from a catalytic site when ATP binds to noncatalytic sites, Biochemistry, 34, 16412–16418.

99. Mitome, N., Ono, S., Suzuki, T. Shimabukuro, K., Muneyuki, E., and Yoshida, M. (2002) The presence of phosphate at a catalytic site suppresses the formation of the MgADP-inhibited form of F(1)-ATPase, Eur. J. Biochem., 269, 53–60.

100. Hirono-Hara, Y., Noji, H. Nishiura, M., Muneyuki, E., Hara, K.Y., Yasuda, R., Kinosita, K. Jr., and Yoshida, M. (2001) Pause and rotation of F(1)-ATPase during catalysis, Proc. Natl. Acad. Sci. USA, 98, 13649–13654.

101. Hirono-Hara, Y., Ishizuka, K., Kinosita, K. Jr., Yoshida, M., and Noji, H. (2005) Activation of pausing F1 motor by external force, Proc. Natl. Acad. Sci. USA, 102, 4288–4293.

102. Saita, E.-I., Iino, R., Suzuki, T., Feniouk, B.A., Kinosita, K. Jr., and Yoshida, M. (2010) Activation and stiffness of the inhibited states of F1-ATPase probed by single-molecule manipulation, J. Biol. Chem., 285, 11411–11417.

103. Pacheco-Moises, F., Garcia, J.J., Rodriguez-Zavala, J.S., and Moreno-Sanchez, R. (2000) Sulfite and membrane energization induce two different active states of the Paracoccus denitrificans F0F1-ATPase, Eur. J. Biochem., 267, 993–1000.

104. Zharova, T.V., and Vinogradov, A.D. (2004) Energy-dependent transformation of F0F1-ATPase in Paracoccus denitrificans plasma membranes, J. Biol. Chem., 279, 12319–12324.

105. Moyle, J., and Mitchell, P. (1975) Active/inactive state transitions of mitochondrial ATPase molecules influenced by Mg2+, anions and aurovertin, FEBS Lett., 56, 55–61.

106. Fitin, A.F., Vasilyeva, E.A., and Vinogradov, A.D. (1979) An inhibitory high affinity binding site for ADP in the oligomycin-sensitive ATPase of beef heart submitochondrial particles, Biochem. Biophys. Res. Commun., 86, 434–439.

107. Minkov, I.B., Fitin, A.F., Vasilyeva, E.A., and Vinogradov, A.D. (1979) Mg2+-induced ADP-dependent inhibition of the ATPase activity of beef heart mitochondrial coupling factor F1, Biochem. Biophys. Res. Commun., 89, 1300–1306.

108. Roveri, O.A., Muller, J.L., Wilms, J., and Slater, E.C. (1980) The pre-steady state and steady-state kinetics of the ATPase activity of mitochondrial F1, Biochim. Biophys. Acta, 589, 241–255.

109. Vasilyeva, E.A., Fitin, A.F., Minkov, I.B., and Vinogradov, A.D. (1980) Kinetics of interaction of adenosine diphosphate and adenosine triphosphate with adenosine triphosphatase of bovine heart submitochondrial particles, Biochem. J., 188, 807–815.

110. Vasilyeva, E.A., Minkov, I.B., Fitin, A.F., and Vinogradov, A.D. (1982) Kinetic mechanism of mitochondrial adenosine triphosphatase. ADP-specific inhibition as revealed by the steady-state kinetics, Biochem. J., 202, 9–14.

111. Martins, O.B., Tuena de Gomez-Puyou, M., and Gomez-Puyou, A. (1988) Pre-steady-state studies of the adenosine triphosphatase activity of coupled submitochondrial particles. Regulation by ADP, Biochemistry, 27, 7552–7558.

112. Galkin, M.A., and Vinogradov, A.D. (1999) Energy-dependent transformation of the catalytic activities of the mitochondrial F0F1-ATP synthase, FEBS Lett., 448, 123–126.

113. Jault, J.-M., Dou, C., Grodsky, N.B., Matsui, T., Yoshida, M., and Allison, W.S. (1996) The α3β3γ subcomplex of the F1-ATPase from the thermophilic Bacillus PS3 with the βT165S substitution does not entrap inhibitory MgADP in a catalytic site during turnover, J. Biol. Chem., 271, 28818–28824.

114. Omote, H., Maeda, M., and Futai, M. (1992) Effects of mutations of conserved Lys-155 and Thr-156 residues in the phosphate-binding glycine-rich sequence of the F1-ATPase beta subunit of Escherichia coli, J. Biol. Chem., 267, 20571–20576.

115. Hu, D., Strotmann, H., Shavit, N., and Leu, S. (1998) The C. reinhardtii CF1 with the mutation betaT168S has high ATPase activity, FEBS Lett., 421, 65–68.

116. Feniouk, B.A., Wakabayashi, C., Suzuki, T., and Yoshida, M. (2012) A point mutation, betaGln259Leu, relieves MgADP inhibition in Bacillus PS3 ATP synthase, Biochim. Biophys. Acta, 1817, S13.

117. Al-Shawi, M.K., and Nakamoto, K.R. (1998) Intergenic suppression of the γM23K uncoupling mutation in F0F1 ATP synthase by βGlu-381 substitutions: the role of the β380DELSEED386 segment in energy coupling, Biochem. J., 330, 707–712.

118. Feniouk, B.A., Rebecchi, A., Giovannini, D., Anefors, S., Mulkidjanian, A.Y., Junge, W., Turina, P., and Melandri, B.A. (2007) Met23Lys mutation in subunit gamma of F(0)F(1)-ATP synthase from Rhodobacter capsulatus impairs the activation of ATP hydrolysis by protonmotive force, Biochim. Biophys. Acta, 1767, 1319–1330.

119. Cross, R.L., and Nalin, C.M. (1982) Adenine nucleotide binding sites on beef heart F1-ATPase. Evidence for three exchangeable sites that are distinct from three noncatalytic sites, J. Biol. Chem., 257, 2874–2881.

120. Abrahams, J.P., Leslie, A.G.W., Lutter, R., and Walker, J.E. (1994) Structure at 2.8 Å resolution of F1-ATPase from bovine heart mitochondria, Nature, 370, 621–628.

121. Milgrom, Y.M., Ehler, L.L., and Boyer, P.D. (1991) The characteristics and effect on catalysis of nucleotide binding to noncatalytic sites of chloroplast F1-ATPase, J. Biol. Chem., 266, 11551–11558.

122. Malyan, A.N. (2013) Noncatalytic nucleotide binding sites: properties and mechanism of involvement in ATP synthase activity regulation, Biochemistry, 78, 1512–1523.

123. Milgrom, Y.M., Ehler, L.L., and Boyer, P.D. (1990) ATP binding at noncatalytic sites of soluble chloroplast F1-ATPase is required for expression of the enzyme activity, J. Biol. Chem., 265, 18725–18728.

124. Murataliev, M.B., and Boyer, P.D. (1992) The mechanism of stimulation of MgATPase activity of chloroplast F1-ATPase by non-catalytic adenine-nucleotide binding. Acceleration of the ATP-dependent release of inhibitory ADP from a catalytic site, Eur. J. Biochem., 209, 681–687.

125. Jault, J.M., and Allison, W.S. (1993) Slow binding of ATP to noncatalytic nucleotide binding sites which accelerates catalysis is responsible for apparent negative cooperativity exhibited by the bovine mitochondrial F1-ATPase, J. Biol. Chem., 268, 1558–1566.

126. Malyan, A.N. (2003) Interaction of oxyanions with thioredoxin-activated chloroplast coupling factor 1, Biochim. Biophys. Acta, 1607, 161–166.

127. Malyan, A.N. (2013) Activation of MgADP-inactivated chloroplast F1-ATPase depends on oxyanion binding to noncatalytic sites, Dokl. Biochem. Biophys., 450, 123–125.

128. Matsui, T., Muneyuki, E., Honda, M., Allison, W.S., Dou, C., and Yoshida, M. (1997) Catalytic activity of the alpha3beta3gamma complex of F1-ATPase without noncatalytic nucleotide binding site, J. Biol. Chem., 272, 8215–8221.

129. Bald, D., Muneyuki, E., Amano, T., Kruip, J., Hisabori, T., and Yoshida, M. (1999) The noncatalytic site-deficient alpha3beta3gamma subcomplex and F0F1-ATP synthase can continuously catalyse ATP hydrolysis when Pi is present, Eur. J. Biochem., 262, 563–568.

130. Amano, T., Matsui, T., Muneyuki, E., Noji, H., Hara, K., Yoshida, M., and Hisabori, T. (1999) alpha3beta3gamma complex of F1-ATPase from thermophilic Bacillus PS3 can maintain steady-state ATP hydrolysis activity depending on the number of non-catalytic sites, Biochem. J., 343, 135–138.

131. Ishikawa, T., and Kato-Yamada, Y. (2014) Severe MgADP inhibition of Bacillus subtilis F1-ATPase is not due to the absence of nucleotide binding to the noncatalytic nucleotide binding sites, PLoS One, 9, 1–5.

132. Hyndman, D.J., Milgrom, Y.M., Bramhall, E.A., and Cross, R.L. (1994) Nucleotide-binding sites on Escherichia coli F1-ATPase. Specificity of noncatalytic sites and inhibition at catalytic sites by MgADP, J. Biol. Chem., 269, 28871–28877.

133. Weber, J., Wilke-Mounts, S., Grell, E., and Senior, A.E. (1994) Tryptophan fluorescence provides a direct probe of nucleotide binding in the noncatalytic sites of Escherichia coli F1-ATPase, J. Biol. Chem., 269, 11261–11268.

134. Bennett, B.D., Kimball, E.H., Gao, M., Osterhout, R., van Dien, S.J., and Rabinowitz, J.D. (2009) Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli, Nat. Chem. Biol., 5, 593–599.

135. Lоtscher, H.R., de Jong, C., and Capaldi, R.A. (1984) Interconversion of high and low adenosinetriphosphatase activity forms of Escherichia coli F1 by the detergent lauryldimethylamine oxide, Biochemistry, 23, 4140–4143.

136. Bragg, P.D., and Hou, C. (1986) Effect of disulfide cross-linking between alpha and delta subunits on the properties of the F1 adenosine triphosphatase of Escherichia coli, Biochim. Biophys. Acta, 851, 385–394.

137. Peskova, Y.B., and Nakamoto, R.K. (2000) Catalytic control and coupling efficiency of the Escherichia coli F0F1 ATP synthase: influence of the F0 sector and epsilon subunit on the catalytic transition state, Biochemistry, 39, 11830–11836.

138. Montero-Lomeli, M., and Dreyfus, G. (1987) Activation of Mg-ATP hydrolysis in isolated Rhodospirillum rubrum H+-ATPase, Arch. Biochem. Biophys., 257, 345–351.

139. Glaser, E., Hamasur, B., Norling, B., and Andersson, B. (1987) Activation of F1-ATPase isolated from potato tuber mitochondria, FEBS Lett., 223, 304–308.

140. Sherman, P.A., and Wimmer, M.J. (1984) Activation of ATPase of spinach coupling factor 1. Release of tightly bound ADP from the soluble enzyme, Eur. J. Biochem., 139, 367–371.

141. Du, Z., and Boyer, P.D. (1989) Control of ATP hydrolysis by ADP bound at the catalytic site of chloroplast ATP synthase as related to protonmotive force and magnesium, Biochemistry, 28, 873–879.

142. Junge, W. (1970) The critical electric potential difference for photophosphorylation. Its relation to the chemiosmotic hypothesis and to the triggering requirements of the ATPase system, Eur. J. Biochem., 14, 582–592.

143. Feniouk, B.A., and Junge, W. (2005) Regulation of the F0F1-ATP synthase: the conformation of subunit ε might be determined by directionality of subunit γ rotation, FEBS Lett., 579, 5114–5118.

144. Bakker-Grunwald, T., and van Dam, K. (1974) On the mechanism of activation of the ATPase in chloroplasts, Biochim. Biophys. Acta, 347, 290–298.

145. Rosing, J., Kayalar, C., and Boyer, P.D. (1977) Evidence for energy-dependent change in phosphate binding for mitochondrial oxidative phosphorylation based on measurements of medium and intermediate phosphate-water exchanges, J. Biol. Chem., 252, 2478–2485.

146. Kayalar, C., Rosing, J., and Boyer, P.D. (1976) 2,4-Dinitrophenol causes a marked increase in the apparent Km of Pi and of ADP for oxidative phosphorylation, Biochem. Biophys. Res. Commun., 72, 1153–1159.

147. Mccarthy, J., and Ferguson, S.J. (1983) Characterization of membrane vesicles from Paracoccus denitrificans and measurements of the effect of partial uncoupling on their thermodynamics of oxidative phosphorylation, Eur. J. Biochem., 132, 417–424.

148. Al-Shawi, M.K., Parsonage, D., and Senior, A.E. (1990) Thermodynamic analyses of the catalytic pathway of F1-ATPase from Escherichia coli. Implications regarding the nature of energy coupling by F1-ATPases, J. Biol. Chem., 265, 4402–4410.

149. Feniouk, B.A., Suzuki, T., and Yoshida, M. (2007) Regulatory interplay between proton motive force, ADP, phosphate, and subunit ε in bacterial ATP synthase, J. Biol. Chem., 282, 764–772.

150. Zharova, T.V., and Vinogradov, A.D. (2006) Energy-linked binding of Pi is required for continuous steady-state proton-translocating ATP hydrolysis catalyzed by F0F1 ATP synthase, Biochemistry, 45, 14552–14558.

151. Senior, A.E., Lee, R.S., Al-Shawi, M.K., and Weber, J. (1992) Catalytic properties of Escherichia coli F1-ATPase depleted of endogenous nucleotides, Arch. Biochem. Biophys., 297, 340–344.

152. Dunn, S.D., Zadorozny, V.D., Tozer, R.G., and Orr, L.E. (1987) Epsilon subunit of Escherichia coli F1-ATPase: effects on affinity for aurovertin and inhibition of product release in unisite ATP hydrolysis, Biochemistry, 26, 4488–4493.

153. Kato, Y., Sasayama, T., Muneyuki, E., and Yoshida, M. (1995) Analysis of time-dependent change of Escherichia coli Fl-ATPase activity and its relationship with apparent negative cooperativity, Biochim. Biophys. Acta, 1231, 275–281.

154. Fischer, S., Graber, P., and Turina, P. (2000) The activity of the ATP synthase from Escherichia coli is regulated by the transmembrane proton motive force, J. Biol. Chem., 275, 30157–30162.

155. Sekiya, M., Hosokawa, H., Nakanishi-Matsui, M., Al-Shawi, M.K., Nakamoto, R.K., and Futai, M. (2010) Single molecule behavior of inhibited and active states of Escherichia coli ATP synthase F1 rotation, J. Biol. Chem., 285, 42058–42067.

156. D’Alessandro, M., Turina, P., and Melandri, B.A. (2008) Intrinsic uncoupling in the ATP synthase of Escherichia coli, Biochim. Biophys. Acta, 1777, 1518–1527.

157. Konno, H., Murakami-Fuse, T., Fuji, F., Koyama, F., Ueoka-Nakanishi, H., Pack, C.-G., Kinjo, M., and Hisabori, T. (2006) The regulator of the F1 motor: inhibition of rotation of cyanobacterial F1-ATPase by the epsilon subunit, EMBO J., 25, 4596–4604.

158. Tsumuraya, M., Furuike, S., Adachi, K., Kinosita Jr., K., and Yoshida, M. (2009) Effect of epsilon subunit on the rotation of thermophilic Bacillus F1-ATPase, FEBS Lett., 583, 1121–1126.

159. Sugawa, M., Okazaki, K.-I., Kobayashi, M., Matsui, T., Hummer, G., Masaike, T., and Nishizaka, T. (2016) F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements, Proc. Natl. Acad. Sci. USA, 113, 2916–2924.

160. Hara, K.Y., Kato-Yamada, Y., Kikuchi, Y., Hisabori, T., and Yoshida, M. (2001) The role of the betaDELSEED motif of F1-ATPase: propagation of the inhibitory effect of the epsilon subunit, J. Biol. Chem., 276, 23969–23973.

161. Ferguson, S.A., Cook, G.M., Montgomery, M.G., Leslie, A.G.W., and Walker, J.E. (2016) Regulation of the thermoalkaliphilic F1-ATPase from Caldalkalibacillus thermarum, Proc. Natl. Acad. Sci. USA, 113, 10860–10865.

162. Haruyama, T., Hirono-Hara, Y., and Kato-Yamada, Y. (2010) Inhibition of thermophilic F1-ATPase by the ε subunit takes different path from the ADP-Mg inhibition, Biophysics, 6, 59–65.

163. Mizumoto, J., Kikuchi, Y., Nakanishi, Y.-H., Mouri, N. Cai, A., Ohta, T., Haruyama, T., and Kato-Yamada, Y. (2013) ε subunit of Bacillus subtilis F1-ATPase relieves MgADP inhibition, PLoS One, 8, e73888.

164. Kato-Yamada, Y., Bald, D., Koike, M., Motohashi, K., Hisabori, T., and Yoshida, M. (1999) Epsilon subunit, an endogenous inhibitor of bacterial F(1)-ATPase, also inhibits F(0)F(1)-ATPase, J. Biol. Chem., 274, 33991–33994.

165. Iino, R., Murakami, T., Iizuka, S., Kato-Yamada, Y., Suzuki, T., and Yoshida, M. (2005) Real-time monitoring of conformational dynamics of the epsilon subunit in F1-ATPase, J. Biol. Chem., 280, 40130–40134.

166. Cingolani, G., and Duncan, T.M. (2011) Structure of the ATP synthase catalytic complex (F(1)) from Escherichia coli in an autoinhibited conformation, Nat. Struct. Mol. Biol., 18, 701–707.

167. Shirakihara, Y., Leslie, A.G., Abrahams, J.P., Walker, J.E., Ueda, T., Sekimoto, Y., Kambara, M., Saika, K., Kagawa, Y., and Yoshida, M. (1997) The crystal structure of the nucleotide-free alpha3beta3 subcomplex of F1-ATPase from the thermophilic Bacillus PS3 is a symmetric trimer, Structure, 5, 825–836.

168. Menz, R.I., Leslie, A.G., and Walker, J.E. (2001) The structure and nucleotide occupancy of bovine mitochondrial F(1)-ATPase are not influenced by crystallisation at high concentrations of nucleotide, FEBS Lett., 494, 11–14.

169. Lodeyro, A.F., Castelli, M.V., and Roveri, O.A. (2008) ATP hydrolysis-driven H+ translocation is stimulated by sulfate, a strong inhibitor of mitochondrial ATP synthesis, J. Bioenerg. Biomembr., 40, 269–279.

170. Shah, N.B., Hutcheon, M.L., Haarer, B.K., and Duncan, T.M. (2013) F1-ATPase of Escherichia coli: the ε-inhibited state forms after ATP hydrolysis, is distinct from the ADP-inhibited state, and responds dynamically to catalytic site ligands, J. Biol. Chem., 288, 9383–9395.